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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OPJ57256.1Hypothetical protein. (200 aa)    
Predicted Functional Partners:
ytfJ
Putative spore protein YtfJ.
  
    0.881
OPJ55582.1
Hypothetical protein.
  
     0.771
OPJ55639.1
Hypothetical protein.
  
     0.755
OPJ55257.1
Hypothetical protein.
  
     0.752
OPJ56041.1
Hypothetical protein.
  
     0.725
OPJ57089.1
Hypothetical protein.
  
     0.719
hemH
Ferrochelatase.
  
     0.694
OPJ55443.1
Hypothetical protein.
  
     0.691
OPJ57244.1
Hypothetical protein.
  
     0.680
OPJ56305.1
Hypothetical protein.
  
     0.672
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.