Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ydjZTVP38/TMEM64 family inner membrane protein YdjZ. (230 aa)    
Predicted Functional Partners:
lutA
Lactate utilization protein A.
   
 0.980
OPJ57265.1
Thiosulfate sulfurtransferase.
  
 0.917
pgaC
poly-beta-1,6-N-acetyl-D-glucosamine synthase.
 
   
 0.791
cofC
2-phospho-L-lactate guanylyltransferase.
 
     0.781
OPJ57274.1
Hypothetical protein.
 
  
 0.781
OPJ57268.1
Phosphotransferase enzyme family protein.
 
     0.762
phnV
Putative 2-aminoethylphosphonate transport system permease protein PhnV.
 
     0.722
cysT
Sulfate transport system permease protein CysT.
 
     0.721
rihA
Pyrimidine-specific ribonucleoside hydrolase RihA.
 
     0.632
scpB
Segregation and condensation protein B; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves.
       0.525
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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