Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
potASpermidine/putrescine import ATP-binding protein PotA; Belongs to the ABC transporter superfamily. (344 aa)    
Predicted Functional Partners:
phnV
Putative 2-aminoethylphosphonate transport system permease protein PhnV.
 
 0.998
cysT
Sulfate transport system permease protein CysT.
 
 0.998
cysW
Sulfate transport system permease protein CysW.
 
 0.965
OPJ57274.1
Hypothetical protein.
 
  
  0.957
OPJ55841.1
Putative ABC transporter ATP-binding protein.
 
     
0.896
futA1
Iron uptake protein A1 precursor.
 
 
 0.851
OPJ57268.1
Phosphotransferase enzyme family protein.
 
     0.850
pgaC
poly-beta-1,6-N-acetyl-D-glucosamine synthase.
 
     0.821
cofC
2-phospho-L-lactate guanylyltransferase.
 
     0.819
OPJ57275.1
Putative inner membrane protein.
       0.751
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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