STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
potASpermidine/putrescine import ATP-binding protein PotA; Belongs to the ABC transporter superfamily. (344 aa)    
Predicted Functional Partners:
cysT
Sulfate transport system permease protein CysT.
 
 0.996
phnV
Putative 2-aminoethylphosphonate transport system permease protein PhnV.
 
 
 0.995
OPJ57274.1
Hypothetical protein.
 
  
  0.959
cysW
Sulfate transport system permease protein CysW.
 
 0.914
OPJ55841.1
Putative ABC transporter ATP-binding protein.
 
     
0.896
futA1
Iron uptake protein A1 precursor.
 
 
 0.894
OPJ57268.1
Phosphotransferase enzyme family protein.
 
     0.856
pgaC
poly-beta-1,6-N-acetyl-D-glucosamine synthase.
 
     0.834
cofC
2-phospho-L-lactate guanylyltransferase.
 
     0.827
OPJ57275.1
Putative inner membrane protein.
       0.752
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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