STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dacF_2D-alanyl-D-alanine carboxypeptidase DacF precursor; Belongs to the peptidase S11 family. (380 aa)    
Predicted Functional Partners:
spoVD_1
Stage V sporulation protein D.
 
 
 0.829
dacF_1
D-alanyl-D-alanine carboxypeptidase DacF precursor; Belongs to the peptidase S11 family.
  
  
 
0.821
dacF_3
D-alanyl-D-alanine carboxypeptidase DacF precursor; Belongs to the peptidase S11 family.
 
  
 
0.821
vanY
D-alanyl-D-alanine carboxypeptidase.
     
 0.789
spoVAD
Stage V sporulation protein AD.
 
   
 0.638
mrcA
Penicillin-binding protein 1A.
     
 0.588
OPJ55597.1
Stage II sporulation protein SpoIIP.
  
  
 0.563
spoVD_3
Stage V sporulation protein D.
  
 
 0.548
OPJ54808.1
Stage II sporulation protein SpoIIR.
  
  
 0.540
rnjA
Ribonuclease J 1; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay.
       0.518
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.