Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OPJ57286.1Hypothetical protein. (716 aa)    
Predicted Functional Partners:
OPJ57287.1
Hypothetical protein; Belongs to the UPF0297 family.
       0.845
yhdN_1
General stress protein 69.
       0.786
OPJ56958.1
Hypothetical protein; Thiamine pyrophosphokinase C terminal.
 
     0.782
yrrK
Putative holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.
       0.781
OPJ56959.1
Hypothetical protein.
 
     0.780
OPJ56960.1
Undecaprenyl-phosphate mannosyltransferase.
 
   
 0.777
mraY_2
phospho-N-acetylmuramoyl-pentapeptide- transferase.
  
     0.774
OPJ56962.1
Hypothetical protein.
  
     0.774
OPJ56738.1
Hypothetical protein; Conserved virulence factor C.
  
 
  0.717
OPJ57283.1
Hypothetical protein; Belongs to the UPF0473 family.
 
     0.671
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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