STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OPJ57286.1Hypothetical protein. (716 aa)    
Predicted Functional Partners:
OPJ56767.1
Hypothetical protein; Anaerobic sulfatase-maturating enzyme homolog YdeM.
  
 
 0.849
OPJ57287.1
Hypothetical protein; Belongs to the UPF0297 family.
       0.841
OPJ56958.1
Hypothetical protein; Thiamine pyrophosphokinase C terminal.
 
     0.782
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.781
OPJ56959.1
Hypothetical protein.
 
     0.780
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
   
   0.776
OPJ56960.1
Undecaprenyl-phosphate mannosyltransferase.
     0.776
OPJ54739.1
Type III restriction enzyme, res subunit.
    
   0.775
mraY_2
phospho-N-acetylmuramoyl-pentapeptide- transferase.
  
     0.774
OPJ56962.1
Hypothetical protein.
  
     0.774
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.