OPJ57295.1 protein (Clostridium thermoalcaliphilum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

OPJ57295.1

Hypothetical protein. (182 aa)

Predicted Functional Partners:

hndA_1

0.979

hndC_1

0.961

hndC_2

0.961

hndA_2

0.847

hndA_3

0.847

hndC_3

0.845

acpP_1

0.834

acpP_2

0.834

ndhI_2

0.751

rsxB_2

0.715

Your Current Organism:

Clostridium thermoalcaliphilum

NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OPJ57295.1	acpP_1	CLOTH_05780	CLOTH_02160	Hypothetical protein.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.834
OPJ57295.1	acpP_2	CLOTH_05780	CLOTH_08980	Hypothetical protein.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.834
OPJ57295.1	hndA_1	CLOTH_05780	CLOTH_04650	Hypothetical protein.	NADP-reducing hydrogenase subunit HndA.	0.979
OPJ57295.1	hndA_2	CLOTH_05780	CLOTH_07650	Hypothetical protein.	NADP-reducing hydrogenase subunit HndA.	0.847
OPJ57295.1	hndA_3	CLOTH_05780	CLOTH_17810	Hypothetical protein.	NADP-reducing hydrogenase subunit HndA.	0.847
OPJ57295.1	hndC_1	CLOTH_05780	CLOTH_04660	Hypothetical protein.	NADP-reducing hydrogenase subunit HndC.	0.961
OPJ57295.1	hndC_2	CLOTH_05780	CLOTH_07660	Hypothetical protein.	NADP-reducing hydrogenase subunit HndC.	0.961
OPJ57295.1	hndC_3	CLOTH_05780	CLOTH_17820	Hypothetical protein.	NADP-reducing hydrogenase subunit HndC.	0.845
OPJ57295.1	ndhI_2	CLOTH_05780	CLOTH_09640	Hypothetical protein.	NAD(P)H-quinone oxidoreductase subunit I.	0.751
OPJ57295.1	rsxB_2	CLOTH_05780	CLOTH_12830	Hypothetical protein.	Electron transport complex subunit RsxB; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.	0.715
acpP_1	OPJ57295.1	CLOTH_02160	CLOTH_05780	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Hypothetical protein.	0.834
acpP_1	hndA_1	CLOTH_02160	CLOTH_04650	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	NADP-reducing hydrogenase subunit HndA.	0.987
acpP_1	hndA_2	CLOTH_02160	CLOTH_07650	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	NADP-reducing hydrogenase subunit HndA.	0.848
acpP_1	hndA_3	CLOTH_02160	CLOTH_17810	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	NADP-reducing hydrogenase subunit HndA.	0.848
acpP_1	hndC_1	CLOTH_02160	CLOTH_04660	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	NADP-reducing hydrogenase subunit HndC.	0.987
acpP_1	hndC_2	CLOTH_02160	CLOTH_07660	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	NADP-reducing hydrogenase subunit HndC.	0.987
acpP_1	hndC_3	CLOTH_02160	CLOTH_17820	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	NADP-reducing hydrogenase subunit HndC.	0.684
acpP_1	ndhI_2	CLOTH_02160	CLOTH_09640	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	NAD(P)H-quinone oxidoreductase subunit I.	0.689
acpP_1	rsxB_2	CLOTH_02160	CLOTH_12830	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Electron transport complex subunit RsxB; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.	0.689
acpP_2	OPJ57295.1	CLOTH_08980	CLOTH_05780	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Hypothetical protein.	0.834