Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OPJ57296.1Hypothetical protein; Alanine racemase, N-terminal domain. (360 aa)    
Predicted Functional Partners:
oraS
D-ornithine 4,5-aminomutase subunit alpha.
 
  
  0.933
oraE
D-ornithine 4,5-aminomutase subunit beta.
 
  
  0.931
OPJ56792.1
Hypothetical protein; Alanine racemase, N-terminal domain.
     
  0.767
proC
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
     
  0.762
OPJ56787.1
Hypothetical protein.
 
     0.707
OPJ56786.1
Dihydrodipicolinate reductase.
 
   
 0.699
trpB
Tryptophan synthase beta chain.
 
     0.691
OPJ56791.1
Hypothetical protein.
 
     0.671
OPJ57297.1
Hypothetical protein.
       0.535
pflB
Formate acetyltransferase.
     
  0.454
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.