STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OPJ56187.1Virulence-associated protein E. (637 aa)    
Predicted Functional Partners:
OPJ55007.1
Hypothetical protein.
     0.976
OPJ56188.1
VRR-NUC domain protein.
 
     0.863
OPJ56189.1
Hypothetical protein; SNF2 family N-terminal domain.
 
     0.806
OPJ55002.1
PD-(D/E)XK nuclease superfamily protein.
 
     0.777
polA_2
DNA polymerase I, thermostable.
 
     0.773
OPJ55001.1
Hypothetical protein.
 
     0.745
OPJ55003.1
Hypothetical protein.
 
     0.739
OPJ55005.1
Phage antirepressor protein KilAC domain protein.
 
     0.635
OPJ56204.1
Head fiber protein.
 
     0.589
OPJ55000.1
Hypothetical protein.
 
     0.585
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.