Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OPJ56190.1Hypothetical protein. (136 aa)    
Predicted Functional Partners:
OPJ56056.1
Anti-sigma28 factor FlgM.
  
 0.851
OPJ56191.1
HNH endonuclease.
 
     0.821
OPJ56188.1
VRR-NUC domain protein.
 
     0.779
OPJ55000.1
Hypothetical protein.
 
     0.757
OPJ56195.1
Hypothetical protein.
 
     0.738
OPJ54999.1
Hypothetical protein.
  
     0.736
OPJ55001.1
Hypothetical protein.
 
     0.734
OPJ56204.1
Head fiber protein.
 
     0.686
OPJ55005.1
Phage antirepressor protein KilAC domain protein.
 
     0.673
fliN
Flagellar motor switch protein FliN.
  
  
 0.652
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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