STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OPJ56192.1Hypothetical protein. (183 aa)    
Predicted Functional Partners:
dpnA
Modification methylase DpnIIB; Belongs to the N(4)/N(6)-methyltransferase family.
 
    0.952
OPJ56195.1
Hypothetical protein.
 
     0.901
OPJ56196.1
Hypothetical protein.
 
    0.900
OPJ56191.1
HNH endonuclease.
 
    0.845
OPJ56203.1
Phage capsid family protein.
 
    0.822
OPJ56199.1
Hypothetical protein.
 
    0.814
clpP1_1
ATP-dependent Clp protease proteolytic subunit 1; Belongs to the peptidase S14 family.
 
    0.798
parB_1
Putative chromosome-partitioning protein ParB; Belongs to the N(4)/N(6)-methyltransferase family.
 
    0.798
OPJ56201.1
Phage portal protein.
 
    0.794
OPJ56200.1
Phage terminase.
 
     0.793
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.