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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dpnAModification methylase DpnIIB; Belongs to the N(4)/N(6)-methyltransferase family. (413 aa)    
Predicted Functional Partners:
OPJ56192.1
Hypothetical protein.
 
    0.952
OPJ56195.1
Hypothetical protein.
 
  
 0.872
OPJ56191.1
HNH endonuclease.
 
  
 0.810
metK_1
S-adenosylmethionine synthase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.
  
    0.807
soj
Sporulation initiation inhibitor protein Soj.
  
 
 0.774
OPJ54685.1
Hypothetical protein.
  
 
 0.774
OPJ56203.1
Phage capsid family protein.
 
    0.755
OPJ56196.1
Hypothetical protein.
 
    0.742
OPJ56189.1
Hypothetical protein; SNF2 family N-terminal domain.
 
     0.736
fokIM_1
Modification methylase FokI.
  
  
 0.732
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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