Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
dpnAModification methylase DpnIIB; Belongs to the N(4)/N(6)-methyltransferase family. (413 aa)    
Predicted Functional Partners:
OPJ56192.1
Hypothetical protein.
 
    0.954
OPJ56195.1
Hypothetical protein.
 
  
 0.872
metK_1
S-adenosylmethionine synthase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.
       0.807
OPJ56191.1
HNH endonuclease.
 
  
 0.804
OPJ56196.1
Hypothetical protein.
 
    0.757
OPJ56188.1
VRR-NUC domain protein.
 
     0.756
fokIM_1
Modification methylase FokI.
  
  
 0.755
OPJ56203.1
Phage capsid family protein.
 
    0.747
OPJ56189.1
Hypothetical protein; SNF2 family N-terminal domain.
 
     0.735
soj
Sporulation initiation inhibitor protein Soj.
  
 
 0.728
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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