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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OPJ56200.1Phage terminase. (544 aa)    
Predicted Functional Partners:
OPJ56201.1
Phage portal protein.
 
   
 0.921
OPJ56203.1
Phage capsid family protein.
 
     0.907
clpP1_1
ATP-dependent Clp protease proteolytic subunit 1; Belongs to the peptidase S14 family.
 
     0.904
OPJ56191.1
HNH endonuclease.
 
  
 0.882
OPJ55904.1
HNH endonuclease.
 
  
 0.849
OPJ55893.1
Phage portal protein.
 
   
 0.803
OPJ56192.1
Hypothetical protein.
 
     0.793
OPJ56195.1
Hypothetical protein.
 
    0.697
dpnA
Modification methylase DpnIIB; Belongs to the N(4)/N(6)-methyltransferase family.
 
     0.693
OPJ55888.1
Phage head-tail joining protein.
 
     0.679
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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