Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
clpP1_1ATP-dependent Clp protease proteolytic subunit 1; Belongs to the peptidase S14 family. (231 aa)    
Predicted Functional Partners:
OPJ56201.1
Phage portal protein.
 
    0.956
clpX
ATP-dependent Clp protease ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.
 
 0.953
OPJ56203.1
Phage capsid family protein.
 
    0.931
OPJ56200.1
Phage terminase.
 
     0.903
clpB
Chaperone protein ClpB; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family.
   
 
 0.849
clpC
Negative regulator of genetic competence ClpC/MecB; Belongs to the ClpA/ClpB family.
   
 
 0.849
OPJ56192.1
Hypothetical protein.
 
    0.798
OPJ56206.1
Phage head-tail joining protein.
 
    0.782
OPJ56208.1
Hypothetical protein.
 
    0.781
OPJ56207.1
Hypothetical protein.
 
    0.778
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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