Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
OPJ56203.1Phage capsid family protein. (401 aa)    
Predicted Functional Partners:
OPJ56201.1
Phage portal protein.
 
 
 
 0.963
clpP1_1
ATP-dependent Clp protease proteolytic subunit 1; Belongs to the peptidase S14 family.
 
    0.931
OPJ56206.1
Phage head-tail joining protein.
 
 
 0.909
OPJ56200.1
Phage terminase.
 
     0.903
OPJ55893.1
Phage portal protein.
 
 
 
 0.862
OPJ55894.1
Phage terminase.
 
     0.837
OPJ56192.1
Hypothetical protein.
 
    0.823
OPJ56205.1
Phage gp6-like head-tail connector protein.
 
    0.821
OPJ56208.1
Hypothetical protein.
 
    0.821
OPJ56207.1
Hypothetical protein.
 
    0.820
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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