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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OPJ56214.1Hypothetical protein. (167 aa)    
Predicted Functional Partners:
OPJ56213.1
Hypothetical protein.
 
  
 0.986
OPJ56215.1
Fibronectin type III domain protein.
 
     0.952
OPJ56212.1
Phage tail protein.
 
     0.947
OPJ56211.1
Hypothetical protein.
 
     0.899
OPJ56210.1
Hypothetical protein.
 
     0.736
OPJ56208.1
Hypothetical protein.
 
     0.717
OPJ56207.1
Hypothetical protein.
 
     0.702
OPJ56209.1
Hypothetical protein.
 
     0.685
OPJ56204.1
Head fiber protein.
 
     0.682
OPJ56218.1
N-acetylmuramoyl-L-alanine amidase.
 
     0.672
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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