Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OPJ56215.1Fibronectin type III domain protein. (823 aa)    
Predicted Functional Partners:
OPJ56214.1
Hypothetical protein.
 
     0.958
OPJ56212.1
Phage tail protein.
 
     0.951
OPJ56213.1
Hypothetical protein.
 
     0.951
OPJ56211.1
Hypothetical protein.
 
     0.917
OPJ56205.1
Phage gp6-like head-tail connector protein.
 
     0.800
OPJ56208.1
Hypothetical protein.
 
     0.791
OPJ56210.1
Hypothetical protein.
 
     0.781
OPJ56218.1
N-acetylmuramoyl-L-alanine amidase.
 
     0.771
OPJ55315.1
Glycosyl transferases group 1.
  
     0.768
OPJ56207.1
Hypothetical protein.
 
     0.761
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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