STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OPJ56216.1Holin family protein. (146 aa)    
Predicted Functional Partners:
OPJ56211.1
Hypothetical protein.
 
    0.839
OPJ56218.1
N-acetylmuramoyl-L-alanine amidase.
 
     0.817
OPJ56217.1
Hypothetical protein.
       0.795
OPJ56203.1
Phage capsid family protein.
 
    0.621
OPJ56209.1
Hypothetical protein.
 
    0.592
OPJ56219.1
Hypothetical protein.
 
    0.582
OPJ56215.1
Fibronectin type III domain protein.
       0.581
OPJ56205.1
Phage gp6-like head-tail connector protein.
 
    0.580
OPJ56214.1
Hypothetical protein.
       0.575
OPJ56201.1
Phage portal protein.
 
   
 0.558
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.