Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OPJ56216.1Holin family protein. (146 aa)    
Predicted Functional Partners:
OPJ56218.1
N-acetylmuramoyl-L-alanine amidase.
 
     0.809
OPJ56217.1
Hypothetical protein.
       0.786
OPJ56211.1
Hypothetical protein.
 
    0.663
OPJ56203.1
Phage capsid family protein.
 
    0.621
OPJ56209.1
Hypothetical protein.
 
  
 0.597
OPJ56205.1
Phage gp6-like head-tail connector protein.
 
    0.576
OPJ56215.1
Fibronectin type III domain protein.
       0.572
OPJ56219.1
Hypothetical protein.
 
    0.566
OPJ56201.1
Phage portal protein.
 
   
 0.561
tnpR_1
Transposon Tn3 resolvase.
 
  
 0.561
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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