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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OPJ56217.1Hypothetical protein. (464 aa)    
Predicted Functional Partners:
OPJ56216.1
Holin family protein.
       0.795
OPJ56218.1
N-acetylmuramoyl-L-alanine amidase.
     
 0.788
OPJ56215.1
Fibronectin type III domain protein.
       0.630
OPJ56214.1
Hypothetical protein.
       0.606
OPJ56212.1
Phage tail protein.
       0.584
OPJ56213.1
Hypothetical protein.
       0.584
OPJ56211.1
Hypothetical protein.
       0.533
kinE
Sporulation kinase E.
     
 0.487
OPJ56219.1
Hypothetical protein.
       0.474
adhE
Aldehyde-alcohol dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
 
 0.442
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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