STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cadA_2Cadmium, zinc and cobalt-transporting ATPase. (865 aa)    
Predicted Functional Partners:
OPJ56223.1
Hypothetical protein; Transcriptional repressor SmtB homolog.
 
  
 0.970
copA
Copper-exporting P-type ATPase A.
 
 
0.901
OPJ56734.1
Hypothetical protein; Transcriptional repressor SmtB homolog.
 
  
 0.885
cadA_1
Cadmium, zinc and cobalt-transporting ATPase.
 
 
0.877
lspA_2
Lipoprotein signal peptidase; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.
 
    0.658
OPJ56226.1
BFD-like [2Fe-2S] binding domain protein.
 
     0.640
tnpR_2
Transposon Tn3 resolvase.
 
     0.603
tnpR_1
Transposon Tn3 resolvase.
 
     0.555
OPJ56221.1
Hypothetical protein.
 
     0.523
nifJ
Pyruvate-flavodoxin oxidoreductase.
  
  
 0.480
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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