close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OPJ56267.1Late competence development protein ComFB. (87 aa)    
Predicted Functional Partners:
prs_1
Ribose-phosphate pyrophosphokinase.
  
  
 0.828
OPJ56265.1
Hypothetical protein.
 
     0.633
ycgR
Flagellar brake protein YcgR.
  
     0.564
rbr3A
Reverse rubrerythrin-1.
       0.531
OPJ56739.1
Hypothetical protein.
  
     0.514
epsF
Type II secretion system protein F.
  
  
 0.483
OPJ54932.1
MazG nucleotide pyrophosphohydrolase domain protein.
  
     0.470
epsE
Type II secretion system protein E.
  
    0.468
OPJ56337.1
Hypothetical protein.
 
    0.430
OPJ56336.1
Hypothetical protein.
 
     0.423
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.