Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rsxB_1Electron transport complex subunit RsxB. (228 aa)    
Predicted Functional Partners:
hndA_1
NADP-reducing hydrogenase subunit HndA.
   
 0.975
nifJ
Pyruvate-flavodoxin oxidoreductase.
    
 0.963
adhE
Aldehyde-alcohol dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
     
 0.932
hndD_1
NADP-reducing hydrogenase subunit HndC.
   
 0.919
hndD_2
NADP-reducing hydrogenase subunit HndC.
   
 0.919
hndD_3
NADP-reducing hydrogenase subunit HndC.
   
 0.919
hndC_1
NADP-reducing hydrogenase subunit HndC.
    
  0.877
hndC_2
NADP-reducing hydrogenase subunit HndC.
    
  0.877
hndC_3
NADP-reducing hydrogenase subunit HndC.
    
  0.873
pyk
Pyruvate kinase; Belongs to the pyruvate kinase family.
     
 0.869
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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