rnz protein (Clostridium thermoalcaliphilum)

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rnz

Ribonuclease Z; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family. (302 aa)

Predicted Functional Partners:

lytE

0.588

rph

0.545

sleB_1

0.541

nifJ

0.429

rny_2

0.421

rpsF

0.419

Your Current Organism:

Clostridium thermoalcaliphilum

NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
lytE	rnz	CLOTH_06870	CLOTH_06890	Putative peptidoglycan endopeptidase LytE precursor.	Ribonuclease Z; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family.	0.588
lytE	rph	CLOTH_06870	CLOTH_07120	Putative peptidoglycan endopeptidase LytE precursor.	Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.	0.512
lytE	sleB_1	CLOTH_06870	CLOTH_06880	Putative peptidoglycan endopeptidase LytE precursor.	Spore cortex-lytic enzyme precursor.	0.786
nifJ	rny_2	CLOTH_01250	CLOTH_04320	Pyruvate-flavodoxin oxidoreductase.	Ribonuclease Y; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family.	0.511
nifJ	rnz	CLOTH_01250	CLOTH_06890	Pyruvate-flavodoxin oxidoreductase.	Ribonuclease Z; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family.	0.429
rny_2	nifJ	CLOTH_04320	CLOTH_01250	Ribonuclease Y; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family.	Pyruvate-flavodoxin oxidoreductase.	0.511
rny_2	rnz	CLOTH_04320	CLOTH_06890	Ribonuclease Y; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family.	Ribonuclease Z; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family.	0.421
rnz	lytE	CLOTH_06890	CLOTH_06870	Ribonuclease Z; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family.	Putative peptidoglycan endopeptidase LytE precursor.	0.588
rnz	nifJ	CLOTH_06890	CLOTH_01250	Ribonuclease Z; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family.	Pyruvate-flavodoxin oxidoreductase.	0.429
rnz	rny_2	CLOTH_06890	CLOTH_04320	Ribonuclease Z; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family.	Ribonuclease Y; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family.	0.421
rnz	rph	CLOTH_06890	CLOTH_07120	Ribonuclease Z; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family.	Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.	0.545
rnz	rpsF	CLOTH_06890	CLOTH_15000	Ribonuclease Z; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family.	30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.419
rnz	sleB_1	CLOTH_06890	CLOTH_06880	Ribonuclease Z; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family.	Spore cortex-lytic enzyme precursor.	0.541
rph	lytE	CLOTH_07120	CLOTH_06870	Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.	Putative peptidoglycan endopeptidase LytE precursor.	0.512
rph	rnz	CLOTH_07120	CLOTH_06890	Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.	Ribonuclease Z; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family.	0.545
rph	rpsF	CLOTH_07120	CLOTH_15000	Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.	30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.465
rpsF	rnz	CLOTH_15000	CLOTH_06890	30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	Ribonuclease Z; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family.	0.419
rpsF	rph	CLOTH_15000	CLOTH_07120	30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.	0.465
sleB_1	lytE	CLOTH_06880	CLOTH_06870	Spore cortex-lytic enzyme precursor.	Putative peptidoglycan endopeptidase LytE precursor.	0.786
sleB_1	rnz	CLOTH_06880	CLOTH_06890	Spore cortex-lytic enzyme precursor.	Ribonuclease Z; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family.	0.541

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