STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cysWSulfate transport system permease protein CysW. (536 aa)    
Predicted Functional Partners:
futA1
Iron uptake protein A1 precursor.
 
 
 0.997
ugpC_1
Sn-glycerol-3-phosphate import ATP-binding protein UgpC; Belongs to the ABC transporter superfamily.
 
 0.970
potA
Spermidine/putrescine import ATP-binding protein PotA; Belongs to the ABC transporter superfamily.
 
 0.914
ugpC_2
Sn-glycerol-3-phosphate import ATP-binding protein UgpC; Belongs to the ABC transporter superfamily.
  
 0.761
OPJ56287.1
Putative DMT superfamily transporter inner membrane protein.
  
    0.512
phnV
Putative 2-aminoethylphosphonate transport system permease protein PhnV.
 
  
 
0.511
dagK
Diacylglycerol kinase.
       0.493
OPJ55825.1
Nicotianamine synthase protein.
 
     0.489
OPJ57274.1
Hypothetical protein.
 
  
  0.484
yfiY
Putative siderophore-binding lipoprotein YfiY precursor.
   
    0.412
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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