Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
phoR_2Alkaline phosphatase synthesis sensor protein PhoR. (460 aa)    
Predicted Functional Partners:
kinE
Sporulation kinase E.
 
 0.990
srrA
Transcriptional regulatory protein SrrA.
 
 0.975
phoP
Alkaline phosphatase synthesis transcriptional regulatory protein PhoP.
 0.885
yycF
Transcriptional regulatory protein YycF.
 
 0.869
OPJ56036.1
Blue-light-activated protein.
   
 0.821
cseB
Transcriptional regulatory protein CseB.
  
  
 0.765
cheY_1
Chemotaxis protein CheY.
 
 0.710
ribBA
Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
  
 
  0.705
cheY_2
Chemotaxis protein CheY.
  
  
 0.676
degU
Transcriptional regulatory protein DegU.
 
 
 0.605
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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