STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amiCN-acetylmuramoyl-L-alanine amidase AmiC precursor. (456 aa)    
Predicted Functional Partners:
cwlD
Germination-specific N-acetylmuramoyl-L-alanine amidase precursor.
  
  
 
0.761
cwlC_2
Sporulation-specific N-acetylmuramoyl-L-alanine amidase.
  
0.757
cwlC_1
Sporulation-specific N-acetylmuramoyl-L-alanine amidase.
  
0.748
yaaH_1
Spore germination protein YaaH.
    
 0.702
hypE
Hydrogenase isoenzymes formation protein HypE.
 
     0.647
OPJ56309.1
Hypothetical protein; Putative metallophosphoesterase MG207 homolog.
       0.617
rph
Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.
       0.600
lytC
N-acetylmuramoyl-L-alanine amidase LytC precursor.
 
 
 
0.582
OPJ56310.1
Hypothetical protein.
       0.541
ydcC
Sporulation protein YdcC.
    
   0.513
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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