Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OPJ56322.1Hypothetical protein. (359 aa)    
Predicted Functional Partners:
ydaM_1
Putative diguanylate cyclase YdaM.
     
  0.867
yunB
Sporulation protein YunB.
  
     0.504
OPJ55192.1
(2Z,6E)-farnesyl diphosphate synthase.
  
     0.504
OPJ56990.1
Putative stage IV sporulation protein YqfD.
  
     0.503
OPJ55767.1
YtxC-like family protein.
  
     0.500
OPJ54801.1
LysM domain protein.
  
     0.494
OPJ55237.1
Hypothetical protein.
  
     0.489
spoIIIAE
Stage III sporulation protein AE precursor.
  
     0.471
OPJ56835.1
Hypothetical protein.
  
     0.469
OPJ56873.1
Hypothetical protein.
  
     0.468
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.