Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OPJ56328.1Hypothetical protein. (231 aa)    
Predicted Functional Partners:
OPJ56862.1
Hypothetical protein.
 
  
 0.883
epsE
Type II secretion system protein E.
       0.752
pilT
Twitching mobility protein.
       0.736
epsF
Type II secretion system protein F.
       0.712
OPJ56332.1
Putative major pilin subunit.
       0.656
OPJ56335.1
Fimbrial assembly protein PilN.
 
     0.598
mcp4_1
Methyl-accepting chemotaxis protein 4.
 
     0.581
yocH
Cell wall-binding protein YocH precursor.
 
     0.576
mcpB_2
Methyl-accepting chemotaxis protein McpB.
       0.548
comC
Type 4 prepilin-like protein leader peptide-processing enzyme.
       0.513
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.