Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
epsEType II secretion system protein E. (559 aa)    
Predicted Functional Partners:
epsF
Type II secretion system protein F.
 
 
 0.999
OPJ56334.1
Competence protein A.
 
 
 
 0.973
comC
Type 4 prepilin-like protein leader peptide-processing enzyme.
 
 
 0.971
OPJ56336.1
Hypothetical protein.
 
 
 0.926
OPJ56335.1
Fimbrial assembly protein PilN.
 
 
 0.924
OPJ56337.1
Hypothetical protein.
  
 0.919
pilT
Twitching mobility protein.
 
  
0.908
OPJ54733.1
Hypothetical protein.
  
 0.861
OPJ56332.1
Putative major pilin subunit.
 
   
 0.849
comEA
ComE operon protein 1.
  
  
 0.828
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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