Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pilTTwitching mobility protein. (352 aa)    
Predicted Functional Partners:
epsF
Type II secretion system protein F.
 
  
 0.967
comC
Type 4 prepilin-like protein leader peptide-processing enzyme.
 
   
 0.942
OPJ56334.1
Competence protein A.
 
   
 0.929
epsE
Type II secretion system protein E.
 
  
0.908
OPJ56332.1
Putative major pilin subunit.
 
   
 0.849
OPJ56328.1
Hypothetical protein.
       0.736
OPJ56336.1
Hypothetical protein.
  
  
 0.719
OPJ56335.1
Fimbrial assembly protein PilN.
  
  
 0.657
OPJ56339.1
Hypothetical protein.
     
 0.561
OPJ56036.1
Blue-light-activated protein.
     
 0.551
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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