STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
epsFType II secretion system protein F. (402 aa)    
Predicted Functional Partners:
epsE
Type II secretion system protein E.
 
 
 0.999
OPJ56334.1
Competence protein A.
 
 
 
 0.982
pilT
Twitching mobility protein.
 
  
 0.971
comC
Type 4 prepilin-like protein leader peptide-processing enzyme.
 
  
 0.962
OPJ56336.1
Hypothetical protein.
 
 
 
 0.942
OPJ56335.1
Fimbrial assembly protein PilN.
 
 
 
 0.941
OPJ56337.1
Hypothetical protein.
 
  
 0.904
OPJ56332.1
Putative major pilin subunit.
 
  
 0.895
OPJ54733.1
Hypothetical protein.
  
  
 0.799
comEA
ComE operon protein 1.
  
  
 0.777
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.