Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OPJ56334.1Competence protein A. (335 aa)    
Predicted Functional Partners:
OPJ56335.1
Fimbrial assembly protein PilN.
 
 0.996
epsF
Type II secretion system protein F.
 
 
 
 0.979
OPJ56336.1
Hypothetical protein.
 
 
 0.974
epsE
Type II secretion system protein E.
 
 
 
 0.973
comC
Type 4 prepilin-like protein leader peptide-processing enzyme.
 
  
 0.965
pilT
Twitching mobility protein.
 
   
 0.929
OPJ56332.1
Putative major pilin subunit.
 
   
 0.815
OPJ56337.1
Hypothetical protein.
 
  
 0.780
OPJ56339.1
Hypothetical protein.
     
 0.752
yneA
Cell division suppressor protein YneA.
    
   0.689
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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