Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OPJ56337.1Hypothetical protein. (286 aa)    
Predicted Functional Partners:
OPJ56336.1
Hypothetical protein.
 
  
 0.938
epsE
Type II secretion system protein E.
  
 0.919
OPJ56335.1
Fimbrial assembly protein PilN.
 
  
 0.899
epsF
Type II secretion system protein F.
 
  
 0.897
comC
Type 4 prepilin-like protein leader peptide-processing enzyme.
  
  
 0.852
OPJ56334.1
Competence protein A.
 
  
 0.780
OPJ56338.1
Hypothetical protein.
       0.752
OPJ56332.1
Putative major pilin subunit.
 
 
 0.748
OPJ56339.1
Hypothetical protein.
  
  
 0.714
OPJ56305.1
Hypothetical protein.
  
     0.665
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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