Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ssuCPutative aliphatic sulfonates transport permease protein SsuC. (266 aa)    
Predicted Functional Partners:
cysA
Sulfate/thiosulfate import ATP-binding protein CysA.
 
 0.999
OPJ56382.1
NMT1/THI5 like protein.
 
 0.997
hndD_1
NADP-reducing hydrogenase subunit HndC.
    
 0.555
hndD_2
NADP-reducing hydrogenase subunit HndC.
    
 0.555
hndD_3
NADP-reducing hydrogenase subunit HndC.
    
 0.555
OPJ56356.1
Hypothetical protein.
       0.531
nasD
Nitrite reductase.
    
 0.482
flr
Flavoredoxin.
  
 
  0.459
hndA_1
NADP-reducing hydrogenase subunit HndA.
       0.449
OPJ56226.1
BFD-like [2Fe-2S] binding domain protein.
    
 0.443
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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