Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cysASulfate/thiosulfate import ATP-binding protein CysA. (253 aa)    
Predicted Functional Partners:
ssuC
Putative aliphatic sulfonates transport permease protein SsuC.
 
 0.999
OPJ56382.1
NMT1/THI5 like protein.
 
 0.996
OPJ55841.1
Putative ABC transporter ATP-binding protein.
 
     
0.864
malF
Maltose transport system permease protein MalF.
 
  
  0.806
hndD_1
NADP-reducing hydrogenase subunit HndC.
    
 0.559
hndD_2
NADP-reducing hydrogenase subunit HndC.
    
 0.559
hndD_3
NADP-reducing hydrogenase subunit HndC.
    
 0.559
OPJ56356.1
Hypothetical protein.
       0.531
sugB
Trehalose transport system permease protein SugB.
 
  
  0.483
nasD
Nitrite reductase.
    
 0.475
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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