STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
glnKSensor histidine kinase GlnK. (434 aa)    
Predicted Functional Partners:
kinE
Sporulation kinase E.
 
 0.997
spo0A_2
Stage 0 sporulation protein A.
 
 
 0.986
ydaM_1
Putative diguanylate cyclase YdaM.
  
 0.880
OPJ56036.1
Blue-light-activated protein.
 
 
 0.867
rbsB
D-ribose-binding periplasmic protein precursor.
    
 0.841
rpfG_1
Cyclic di-GMP phosphodiesterase response regulator RpfG.
    
  0.803
echA8
Putative enoyl-CoA hydratase echA8; Belongs to the enoyl-CoA hydratase/isomerase family.
   
 0.799
phoP
Alkaline phosphatase synthesis transcriptional regulatory protein PhoP.
  
 0.715
srrA
Transcriptional regulatory protein SrrA.
  
 0.715
yycF
Transcriptional regulatory protein YycF.
  
 0.715
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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