Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| OPJ56349.1 | cfiB | CLOTH_07530 | CLOTH_05770 | 2-oxoglutaramate amidase. | 2-oxoglutarate carboxylase small subunit; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second. | 0.873 |
| OPJ56349.1 | gdhA | CLOTH_07530 | CLOTH_07850 | 2-oxoglutaramate amidase. | NADP-specific glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | 0.774 |
| OPJ56349.1 | gltD | CLOTH_07530 | CLOTH_06400 | 2-oxoglutaramate amidase. | Glutamate synthase small chain. | 0.855 |
| OPJ56349.1 | nifJ | CLOTH_07530 | CLOTH_01250 | 2-oxoglutaramate amidase. | Pyruvate-flavodoxin oxidoreductase. | 0.911 |
| OPJ56349.1 | pckA | CLOTH_07530 | CLOTH_07490 | 2-oxoglutaramate amidase. | Phosphoenolpyruvate carboxykinase; Belongs to the phosphoenolpyruvate carboxykinase (ATP) family. | 0.800 |
| OPJ56349.1 | purL | CLOTH_07530 | CLOTH_11620 | 2-oxoglutaramate amidase. | Phosphoribosylformylglycinamidine synthase 2. | 0.711 |
| accB | cfiB | CLOTH_04800 | CLOTH_05770 | Biotin carboxyl carrier protein of acetyl-CoA carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. | 2-oxoglutarate carboxylase small subunit; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second. | 0.924 |
| accB | gdhA | CLOTH_04800 | CLOTH_07850 | Biotin carboxyl carrier protein of acetyl-CoA carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. | NADP-specific glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | 0.689 |
| accB | glsA2 | CLOTH_04800 | CLOTH_09800 | Biotin carboxyl carrier protein of acetyl-CoA carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. | Glutaminase 2; Belongs to the glutaminase family. | 0.403 |
| accB | gltD | CLOTH_04800 | CLOTH_06400 | Biotin carboxyl carrier protein of acetyl-CoA carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. | Glutamate synthase small chain. | 0.694 |
| accB | korA_2 | CLOTH_04800 | CLOTH_20270 | Biotin carboxyl carrier protein of acetyl-CoA carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. | 2-oxoglutarate oxidoreductase subunit KorA. | 0.906 |
| accB | nifJ | CLOTH_04800 | CLOTH_01250 | Biotin carboxyl carrier protein of acetyl-CoA carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. | Pyruvate-flavodoxin oxidoreductase. | 0.978 |
| accB | pckA | CLOTH_04800 | CLOTH_07490 | Biotin carboxyl carrier protein of acetyl-CoA carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. | Phosphoenolpyruvate carboxykinase; Belongs to the phosphoenolpyruvate carboxykinase (ATP) family. | 0.925 |
| accB | purL | CLOTH_04800 | CLOTH_11620 | Biotin carboxyl carrier protein of acetyl-CoA carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. | Phosphoribosylformylglycinamidine synthase 2. | 0.513 |
| arcC1 | gdhA | CLOTH_19160 | CLOTH_07850 | Carbamate kinase 1; Belongs to the carbamate kinase family. | NADP-specific glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | 0.679 |
| arcC1 | nifJ | CLOTH_19160 | CLOTH_01250 | Carbamate kinase 1; Belongs to the carbamate kinase family. | Pyruvate-flavodoxin oxidoreductase. | 0.431 |
| arcC1 | purL | CLOTH_19160 | CLOTH_11620 | Carbamate kinase 1; Belongs to the carbamate kinase family. | Phosphoribosylformylglycinamidine synthase 2. | 0.413 |
| cfiB | OPJ56349.1 | CLOTH_05770 | CLOTH_07530 | 2-oxoglutarate carboxylase small subunit; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second. | 2-oxoglutaramate amidase. | 0.873 |
| cfiB | accB | CLOTH_05770 | CLOTH_04800 | 2-oxoglutarate carboxylase small subunit; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second. | Biotin carboxyl carrier protein of acetyl-CoA carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. | 0.924 |
| cfiB | gdhA | CLOTH_05770 | CLOTH_07850 | 2-oxoglutarate carboxylase small subunit; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second. | NADP-specific glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | 0.705 |
page 1 of 4