OPJ56382.1 protein (Clostridium thermoalcaliphilum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

OPJ56382.1

NMT1/THI5 like protein. (334 aa)

Predicted Functional Partners:

ssuC

0.997

cysA

0.996

OPJ56036.1

0.712

kinE

0.628

hndD_1

0.572

hndD_2

0.572

hndD_3

0.572

gpr

0.552

OPJ56989.1

0.546

OPJ56936.1

0.544

Your Current Organism:

Clostridium thermoalcaliphilum

NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OPJ56036.1	OPJ56382.1	CLOTH_12140	CLOTH_07860	Blue-light-activated protein.	NMT1/THI5 like protein.	0.712
OPJ56036.1	kinE	CLOTH_12140	CLOTH_12130	Blue-light-activated protein.	Sporulation kinase E.	0.999
OPJ56382.1	OPJ56036.1	CLOTH_07860	CLOTH_12140	NMT1/THI5 like protein.	Blue-light-activated protein.	0.712
OPJ56382.1	OPJ56936.1	CLOTH_07860	CLOTH_02180	NMT1/THI5 like protein.	Hypothetical protein; Transcription termination factor Rho.	0.544
OPJ56382.1	OPJ56989.1	CLOTH_07860	CLOTH_02710	NMT1/THI5 like protein.	YabP family protein.	0.546
OPJ56382.1	cysA	CLOTH_07860	CLOTH_07590	NMT1/THI5 like protein.	Sulfate/thiosulfate import ATP-binding protein CysA.	0.996
OPJ56382.1	gpr	CLOTH_07860	CLOTH_13550	NMT1/THI5 like protein.	Germination protease precursor; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.	0.552
OPJ56382.1	hndD_1	CLOTH_07860	CLOTH_04670	NMT1/THI5 like protein.	NADP-reducing hydrogenase subunit HndC.	0.572
OPJ56382.1	hndD_2	CLOTH_07860	CLOTH_07670	NMT1/THI5 like protein.	NADP-reducing hydrogenase subunit HndC.	0.572
OPJ56382.1	hndD_3	CLOTH_07860	CLOTH_17830	NMT1/THI5 like protein.	NADP-reducing hydrogenase subunit HndC.	0.572
OPJ56382.1	kinE	CLOTH_07860	CLOTH_12130	NMT1/THI5 like protein.	Sporulation kinase E.	0.628
OPJ56382.1	ssuC	CLOTH_07860	CLOTH_07580	NMT1/THI5 like protein.	Putative aliphatic sulfonates transport permease protein SsuC.	0.997
OPJ56936.1	OPJ56382.1	CLOTH_02180	CLOTH_07860	Hypothetical protein; Transcription termination factor Rho.	NMT1/THI5 like protein.	0.544
OPJ56936.1	OPJ56989.1	CLOTH_02180	CLOTH_02710	Hypothetical protein; Transcription termination factor Rho.	YabP family protein.	0.710
OPJ56936.1	gpr	CLOTH_02180	CLOTH_13550	Hypothetical protein; Transcription termination factor Rho.	Germination protease precursor; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.	0.767
OPJ56989.1	OPJ56382.1	CLOTH_02710	CLOTH_07860	YabP family protein.	NMT1/THI5 like protein.	0.546
OPJ56989.1	OPJ56936.1	CLOTH_02710	CLOTH_02180	YabP family protein.	Hypothetical protein; Transcription termination factor Rho.	0.710
OPJ56989.1	gpr	CLOTH_02710	CLOTH_13550	YabP family protein.	Germination protease precursor; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.	0.679
cysA	OPJ56382.1	CLOTH_07590	CLOTH_07860	Sulfate/thiosulfate import ATP-binding protein CysA.	NMT1/THI5 like protein.	0.996
cysA	hndD_1	CLOTH_07590	CLOTH_04670	Sulfate/thiosulfate import ATP-binding protein CysA.	NADP-reducing hydrogenase subunit HndC.	0.559