Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OPJ56385.1Hypothetical protein. (121 aa)    
Predicted Functional Partners:
OPJ56384.1
Metal-dependent hydrolase.
  
    0.604
OPJ56209.1
Hypothetical protein.
  
    0.594
OPJ56429.1
Chlorophenol reductase precursor.
  
    0.594
OPJ55885.1
Hypothetical protein.
  
    0.594
OPJ56386.1
Fusaric acid resistance protein family protein.
       0.584
OPJ56383.1
Hypothetical protein.
     
 0.554
OPJ56036.1
Blue-light-activated protein.
     
 0.534
kinE
Sporulation kinase E.
  
  
 0.531
ribBA
Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
     
 0.509
epr
Minor extracellular protease Epr precursor.
  
 
 0.465
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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