STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OPJ56388.1Hypothetical protein; Conserved virulence factor B; Belongs to the CvfB family. (276 aa)    
Predicted Functional Partners:
OPJ56387.1
ferredoxin--NADP reductase.
  
    0.738
OPJ56386.1
Fusaric acid resistance protein family protein.
       0.566
ywiB
Putative beta-barrel protein YwiB.
   
    0.537
OPJ56385.1
Hypothetical protein.
  
    0.452
pyk
Pyruvate kinase; Belongs to the pyruvate kinase family.
  
    0.440
pncC
Nicotinamide-nucleotide amidohydrolase PncC; Belongs to the CinA family.
       0.436
fdtC
dTDP-3-amino-3,6-dideoxy-alpha-D-galactopyranose 3-N-acetyltransferase.
 
     0.415
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.