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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OPJ56398.1Small, acid-soluble spore protein beta. (67 aa)    
Predicted Functional Partners:
gpr
Germination protease precursor; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
  
 0.774
OPJ56867.1
PRC-barrel domain protein.
  
     0.707
spoVAD
Stage V sporulation protein AD.
  
    0.692
ylbJ
Sporulation integral membrane protein YlbJ.
  
     0.691
spoIIE
Stage II sporulation protein E.
  
     0.688
OPJ56727.1
SpoVA protein.
  
     0.650
spoIVB
SpoIVB peptidase precursor.
  
     0.633
OPJ56942.1
Hypothetical protein.
  
   
 0.620
OPJ56990.1
Putative stage IV sporulation protein YqfD.
  
     0.618
spoIIIAE
Stage III sporulation protein AE precursor.
  
     0.611
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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