Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
prdA_1D-proline reductase proprotein PrdA. (627 aa)    
Predicted Functional Partners:
prdB_1
D-proline reductase subunit gamma.
  
 0.996
OPJ56409.1
Proline racemase; Belongs to the proline racemase family.
 
  
 0.981
OPJ56404.1
Hypothetical protein.
 
     0.955
prdB_2
D-proline reductase subunit gamma.
 
     0.941
rnfC
Electron transport complex subunit RnfC.
 
   
 0.901
OPJ56410.1
Sulfite exporter TauE/SafE.
 
     0.854
prdA_2
D-proline reductase proprotein PrdA.
 
  
0.790
OPJ56786.1
Dihydrodipicolinate reductase.
     
  0.765
prdA_3
D-proline reductase proprotein PrdA.
 
    
0.583
zraR
Transcriptional regulatory protein ZraR.
 
   
 0.440
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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