STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prdB_1D-proline reductase subunit gamma. (150 aa)    
Predicted Functional Partners:
prdA_1
D-proline reductase proprotein PrdA.
  
 0.997
prdB_2
D-proline reductase subunit gamma.
     0.994
OPJ56409.1
Proline racemase; Belongs to the proline racemase family.
 
  
 0.986
prdA_2
D-proline reductase proprotein PrdA.
  
 0.984
prdA_3
D-proline reductase proprotein PrdA.
   
 0.976
OPJ56404.1
Hypothetical protein.
 
     0.951
rnfC
Electron transport complex subunit RnfC.
 
   
 0.922
OPJ56410.1
Sulfite exporter TauE/SafE.
 
     0.868
grdA1_1
Glycine/sarcosine/betaine reductase complex component A1.
 
   
 0.502
grdE
Glycine reductase complex component B subunits alpha and beta.
 
  
 0.486
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.