STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OPJ56410.1Sulfite exporter TauE/SafE. (293 aa)    
Predicted Functional Partners:
prdA_3
D-proline reductase proprotein PrdA.
 
     0.910
prdA_2
D-proline reductase proprotein PrdA.
 
     0.907
prdB_2
D-proline reductase subunit gamma.
 
     0.873
prdB_1
D-proline reductase subunit gamma.
 
     0.868
OPJ56404.1
Hypothetical protein.
 
     0.861
prdA_1
D-proline reductase proprotein PrdA.
 
     0.858
rnfC
Electron transport complex subunit RnfC.
 
     0.792
OPJ56409.1
Proline racemase; Belongs to the proline racemase family.
 
     0.722
htrB
Serine protease Do-like HtrB.
    
 
 0.452
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.