Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
nifANif-specific regulatory protein. (588 aa)    
Predicted Functional Partners:
kinE
Sporulation kinase E.
 
  
 0.850
rpoN
RNA polymerase sigma-54 factor.
 
  
 0.841
OPJ56414.1
Hypothetical protein.
       0.773
OPJ56036.1
Blue-light-activated protein.
  
  
 0.729
ubiE
Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE.
       0.653
ribBA
Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
     
  0.636
OPJ56416.1
Serine dehydratase alpha chain; Belongs to the UPF0597 family.
     
 0.535
ssbA_1
Single-stranded DNA-binding protein A.
       0.469
putP
Sodium/proline symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
  
  0.427
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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