rpoN protein (Clostridium thermoalcaliphilum)

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second shell of interactors

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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Score

rpoN

RNA polymerase sigma-54 factor. (441 aa)

Predicted Functional Partners:

rpoA

0.925

rpoB

0.923

rpoC

0.899

rpoZ

0.894

zraR

0.870

kinE

0.844

rocR

0.829

nifA

0.829

tyrR

0.829

sigA

0.771

Your Current Organism:

Clostridium thermoalcaliphilum

NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
kinE	nifA	CLOTH_12130	CLOTH_08190	Sporulation kinase E.	Nif-specific regulatory protein.	0.889
kinE	rocR	CLOTH_12130	CLOTH_00670	Sporulation kinase E.	Arginine utilization regulatory protein RocR.	0.887
kinE	rpoB	CLOTH_12130	CLOTH_18670	Sporulation kinase E.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.509
kinE	rpoN	CLOTH_12130	CLOTH_08340	Sporulation kinase E.	RNA polymerase sigma-54 factor.	0.844
kinE	sigA	CLOTH_12130	CLOTH_03350	Sporulation kinase E.	RNA polymerase sigma factor SigA; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	0.755
kinE	tyrR	CLOTH_12130	CLOTH_08310	Sporulation kinase E.	Transcriptional regulatory protein TyrR.	0.882
kinE	zraR	CLOTH_12130	CLOTH_08050	Sporulation kinase E.	Transcriptional regulatory protein ZraR.	0.968
nifA	kinE	CLOTH_08190	CLOTH_12130	Nif-specific regulatory protein.	Sporulation kinase E.	0.889
nifA	rpoN	CLOTH_08190	CLOTH_08340	Nif-specific regulatory protein.	RNA polymerase sigma-54 factor.	0.829
rocR	kinE	CLOTH_00670	CLOTH_12130	Arginine utilization regulatory protein RocR.	Sporulation kinase E.	0.887
rocR	rpoN	CLOTH_00670	CLOTH_08340	Arginine utilization regulatory protein RocR.	RNA polymerase sigma-54 factor.	0.829
rpoA	rpoB	CLOTH_18300	CLOTH_18670	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
rpoA	rpoC	CLOTH_18300	CLOTH_18660	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
rpoA	rpoN	CLOTH_18300	CLOTH_08340	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RNA polymerase sigma-54 factor.	0.925
rpoA	rpoZ	CLOTH_18300	CLOTH_01840	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.999
rpoA	sigA	CLOTH_18300	CLOTH_03350	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RNA polymerase sigma factor SigA; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	0.950
rpoB	kinE	CLOTH_18670	CLOTH_12130	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Sporulation kinase E.	0.509
rpoB	rpoA	CLOTH_18670	CLOTH_18300	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
rpoB	rpoC	CLOTH_18670	CLOTH_18660	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
rpoB	rpoN	CLOTH_18670	CLOTH_08340	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RNA polymerase sigma-54 factor.	0.923