citE protein (Clostridium thermoalcaliphilum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

citE

Citrate lyase subunit beta; Belongs to the HpcH/HpaI aldolase family. (301 aa)

Predicted Functional Partners:

citD

0.999

citF

0.999

citX

0.997

citC

0.994

citG

0.956

accB

0.948

nifJ

0.939

OPJ55615.1

0.706

ldh

0.666

ttdA

0.631

Your Current Organism:

Clostridium thermoalcaliphilum

NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OPJ55615.1	accB	CLOTH_13740	CLOTH_04800	NAD-dependent malic enzyme.	Biotin carboxyl carrier protein of acetyl-CoA carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.	0.904
OPJ55615.1	citC	CLOTH_13740	CLOTH_08560	NAD-dependent malic enzyme.	[citrate [pro-3S]-lyase] ligase; Acetylation of prosthetic group (2-(5''-phosphoribosyl)-3'- dephosphocoenzyme-A) of the gamma subunit of citrate lyase.	0.492
OPJ55615.1	citD	CLOTH_13740	CLOTH_08570	NAD-dependent malic enzyme.	Citrate lyase acyl carrier protein; Covalent carrier of the coenzyme of citrate lyase.	0.536
OPJ55615.1	citE	CLOTH_13740	CLOTH_08580	NAD-dependent malic enzyme.	Citrate lyase subunit beta; Belongs to the HpcH/HpaI aldolase family.	0.706
OPJ55615.1	citF	CLOTH_13740	CLOTH_08590	NAD-dependent malic enzyme.	Citrate lyase alpha chain.	0.528
OPJ55615.1	ldh	CLOTH_13740	CLOTH_08710	NAD-dependent malic enzyme.	L-lactate dehydrogenase.	0.857
OPJ55615.1	nifJ	CLOTH_13740	CLOTH_01250	NAD-dependent malic enzyme.	Pyruvate-flavodoxin oxidoreductase.	0.951
OPJ55615.1	ttdA	CLOTH_13740	CLOTH_13720	NAD-dependent malic enzyme.	L(+)-tartrate dehydratase subunit alpha.	0.979
accB	OPJ55615.1	CLOTH_04800	CLOTH_13740	Biotin carboxyl carrier protein of acetyl-CoA carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.	NAD-dependent malic enzyme.	0.904
accB	citC	CLOTH_04800	CLOTH_08560	Biotin carboxyl carrier protein of acetyl-CoA carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.	[citrate [pro-3S]-lyase] ligase; Acetylation of prosthetic group (2-(5''-phosphoribosyl)-3'- dephosphocoenzyme-A) of the gamma subunit of citrate lyase.	0.437
accB	citD	CLOTH_04800	CLOTH_08570	Biotin carboxyl carrier protein of acetyl-CoA carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.	Citrate lyase acyl carrier protein; Covalent carrier of the coenzyme of citrate lyase.	0.500
accB	citE	CLOTH_04800	CLOTH_08580	Biotin carboxyl carrier protein of acetyl-CoA carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.	Citrate lyase subunit beta; Belongs to the HpcH/HpaI aldolase family.	0.948
accB	citF	CLOTH_04800	CLOTH_08590	Biotin carboxyl carrier protein of acetyl-CoA carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.	Citrate lyase alpha chain.	0.625
accB	citX	CLOTH_04800	CLOTH_08600	Biotin carboxyl carrier protein of acetyl-CoA carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.	Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase.	0.518
accB	ldh	CLOTH_04800	CLOTH_08710	Biotin carboxyl carrier protein of acetyl-CoA carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.	L-lactate dehydrogenase.	0.946
accB	nifJ	CLOTH_04800	CLOTH_01250	Biotin carboxyl carrier protein of acetyl-CoA carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.	Pyruvate-flavodoxin oxidoreductase.	0.967
accB	ttdA	CLOTH_04800	CLOTH_13720	Biotin carboxyl carrier protein of acetyl-CoA carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.	L(+)-tartrate dehydratase subunit alpha.	0.921
citC	OPJ55615.1	CLOTH_08560	CLOTH_13740	[citrate [pro-3S]-lyase] ligase; Acetylation of prosthetic group (2-(5''-phosphoribosyl)-3'- dephosphocoenzyme-A) of the gamma subunit of citrate lyase.	NAD-dependent malic enzyme.	0.492
citC	accB	CLOTH_08560	CLOTH_04800	[citrate [pro-3S]-lyase] ligase; Acetylation of prosthetic group (2-(5''-phosphoribosyl)-3'- dephosphocoenzyme-A) of the gamma subunit of citrate lyase.	Biotin carboxyl carrier protein of acetyl-CoA carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.	0.437
citC	citD	CLOTH_08560	CLOTH_08570	[citrate [pro-3S]-lyase] ligase; Acetylation of prosthetic group (2-(5''-phosphoribosyl)-3'- dephosphocoenzyme-A) of the gamma subunit of citrate lyase.	Citrate lyase acyl carrier protein; Covalent carrier of the coenzyme of citrate lyase.	0.995