Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
rsgIanti-sigma-I factor RsgI. (305 aa)    
Predicted Functional Partners:
sigI
RNA polymerase sigma factor SigI; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; Belongs to the sigma-70 factor family. SigI subfamily.
 
 
 0.993
fgs
Folylpolyglutamate synthase; Belongs to the folylpolyglutamate synthase family.
  
    0.593
OPJ56462.1
Hypothetical protein.
       0.588
OPJ56513.1
Hypothetical protein.
  
     0.574
OPJ57228.1
Hypothetical protein.
  
     0.528
OPJ56242.1
Metal-binding protein.
 
     0.510
OPJ55064.1
Zinc dependent phospholipase C.
  
     0.500
OPJ57224.1
Hypothetical protein.
  
     0.497
OPJ56519.1
Hypothetical protein.
  
     0.474
OPJ57298.1
Coat F domain protein.
  
     0.473
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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