Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
OPJ56465.1NADPH-dependent FMN reductase. (356 aa)    
Predicted Functional Partners:
ldh
L-lactate dehydrogenase.
 
    0.941
nadD_1
Nicotinate-nucleotide adenylyltransferase.
 
     0.930
yneA
Cell division suppressor protein YneA.
  
  
 0.634
OPJ55442.1
Colicin V production protein.
  
     0.620
OPJ57089.1
Hypothetical protein.
  
     0.569
OPJ56046.1
FlgN protein.
  
     0.490
oadG
Oxaloacetate decarboxylase gamma chain.
  
     0.476
OPJ56305.1
Hypothetical protein.
  
     0.459
OPJ55256.1
Hypothetical protein.
  
     0.455
OPJ57096.1
Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
  
     0.424
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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