STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OPJ56465.1NADPH-dependent FMN reductase. (356 aa)    
Predicted Functional Partners:
ldh
L-lactate dehydrogenase.
 
  
 0.934
nadD_1
Nicotinate-nucleotide adenylyltransferase.
 
     0.920
OPJ55442.1
Colicin V production protein.
  
     0.620
OPJ57089.1
Hypothetical protein.
  
     0.569
yneA
Cell division suppressor protein YneA.
  
  
 0.537
OPJ56046.1
FlgN protein.
  
     0.490
oadG
Oxaloacetate decarboxylase gamma chain.
  
   
 0.490
OPJ56305.1
Hypothetical protein.
  
     0.459
OPJ55256.1
Hypothetical protein.
  
     0.455
OPJ57096.1
Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
  
     0.424
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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