Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
OPJ56468.1Hypothetical protein. (380 aa)    
Predicted Functional Partners:
OPJ56470.1
Branched-chain amino acid transport system / permease component; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.951
OPJ56471.1
Ribose ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.951
mglA_1
Galactose/methyl galactoside import ATP-binding protein MglA.
 
 
 0.929
glcB
PTS system glucoside-specific EIICBA component.
  
 
 0.776
ptsG
PTS system glucose-specific EIICBA component.
  
 
 0.776
ptsH
Phosphocarrier protein HPr.
   
 
 0.691
crh
HPr-like protein Crh.
   
 
 0.691
pyk
Pyruvate kinase; Belongs to the pyruvate kinase family.
    
 
 0.675
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
    
   0.568
ribBA
Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
   0.568
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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