STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oppF_2Oligopeptide transport ATP-binding protein OppF; Belongs to the ABC transporter superfamily. (316 aa)    
Predicted Functional Partners:
gsiD
Glutathione transport system permease protein GsiD.
 0.999
gsiC
Glutathione transport system permease protein GsiC.
 
 0.997
oppC
Oligopeptide transport system permease protein OppC.
 0.984
oppB
Oligopeptide transport system permease protein OppB.
 
 0.968
gsiB
Glutathione-binding protein GsiB precursor.
 
 0.920
oppA
Oligopeptide-binding protein OppA precursor.
 
 
 0.897
oppD_2
Oligopeptide transport ATP-binding protein OppD; Belongs to the ABC transporter superfamily.
 
  
 
0.852
oppF_1
Oligopeptide transport ATP-binding protein OppF; Belongs to the ABC transporter superfamily.
  
  0.850
dppA
Periplasmic dipeptide transport protein precursor.
 
 0.843
appA
Oligopeptide-binding protein AppA precursor.
 
 0.789
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.